OpenSearch Error - java.lang.ArrayIndexOutOfBoundsException: 100

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OpenSearch Error - java.lang.ArrayIndexOutOfBoundsException: 100

sealeyj
I have an open search result that throws an exception in the carrot2 interface.  The clusters are built correctly however the documents list is not shown at all below is the search item being returned and the error message thrown:

<item>
  <title>Christel NAVARRO Book 6083-10 Title: Effect of Bi... - 19/10/2010 17:31:35</title> 
  <link>http://10.25.100.56/webtop/drl/objectId/09002955817ba02e</link> 
  <description>Christel NAVARRO Book 6083-10 Title: Effect of Birc5 (Survivin) siRNA on cell proliferation in Huvec Cells, n=1. Aim: Confirm the role of Birc5 on cell proliferation using Incucyte. H-9 H-9 H-10 H-10 H-13 H-13 smartpool smartpool Luci Luci Cell death Cell death H-9 H-10 H-13 smartpool Luci Cell death 100817: transfection Prepare 3,6ml of 10x final concentration of Atufect01 (i.e 10mg/ml) by diluting it 1/100 in Media without serum or antibiotics. Transfer 20ml/well of complexes to cells containing 80ml/well of the appropriate media (final dilution 1:5) Incubate plates at 37°C for 4h and discard complexes from cells. H-9, H-10, H-13 and smart pool have a lot of multinuclear cells, less in luciferase and Atufect cells. 100820: 10.30am: Perform caspase 3/7 glo assay.</description> 
  </item>

ERROR:

java.lang.ArrayIndexOutOfBoundsException: 100
        at com.sun.org.apache.xerces.internal.impl.XMLEntityScanner.scanLiteral(XMLEntityScanner.java:1135)
        at com.sun.org.apache.xerces.internal.impl.XMLScanner.scanAttributeValue(XMLScanner.java:974)
        at com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.scanAttribute(XMLNSDocumentScannerImpl.java:460)
        at com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.scanStartElement(XMLNSDocumentScannerImpl.java:277)
        at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2747)
        at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:648)
        at com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:140)
        at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:510)
        at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:807)
        at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:737)
        at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:107)
        at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1205)
        at org.carrot2.util.xsltfilter.XSLTFilterServletResponse.processWithXslt(XSLTFilterServletResponse.java:400)
        at org.carrot2.util.xsltfilter.XSLTFilterServletResponse.finishResponse(XSLTFilterServletResponse.java:294)
        at org.carrot2.util.xsltfilter.XSLTFilter.doFilter(XSLTFilter.java:145)
        at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
        at com.planetj.servlet.filter.compression.CompressingFilter.doFilter(CompressingFilter.java:270)
        at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
        at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:474)
        at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:119)
        at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:517)
        at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
        at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:934)
        at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:404)
        at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:184)
        at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:869)
        at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:117)
        at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
        at org.eclipse.jetty.server.Server.handle(Server.java:346)
        at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:581)
        at org.eclipse.jetty.server.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:1040)
        at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:592)
        at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:214)
        at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:411)
        at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:526)
        at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:41)
        at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:528)
        at java.lang.Thread.run(Thread.java:619)

Thanks for looking, any help would be great.

Cheers,
James
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Re: OpenSearch Error - java.lang.ArrayIndexOutOfBoundsException: 100

Dawid Weiss-2

Hi James. Can you file a JIRA issue here and attach a sample separate XML that is causing this exception?


Dawid

On Fri, May 6, 2011 at 10:42 AM, sealeyj <[hidden email]> wrote:
I have an open search result that throws an exception in the carrot2
interface.  The clusters are built correctly however the documents list is
not shown at all below is the search item being returned and the error
message thrown:

<item>
 <title>Christel NAVARRO Book 6083-10 Title: Effect of Bi... - 19/10/2010
17:31:35</title>
 <link>http://10.25.100.56/webtop/drl/objectId/09002955817ba02e</link>
 <description>Christel NAVARRO Book 6083-10 Title: Effect of Birc5
(Survivin) siRNA on cell proliferation in Huvec Cells, n=1. Aim: Confirm the
role of Birc5 on cell proliferation using Incucyte. H-9 H-9 H-10 H-10 H-13
H-13 smartpool smartpool Luci Luci Cell death Cell death H-9 H-10 H-13
smartpool Luci Cell death 100817: transfection Prepare 3,6ml of 10x final
concentration of Atufect01 (i.e 10mg/ml) by diluting it 1/100 in Media
without serum or antibiotics. Transfer 20ml/well of complexes to cells
containing 80ml/well of the appropriate media (final dilution 1:5) Incubate
plates at 37°C for 4h and discard complexes from cells. H-9, H-10, H-13 and
smart pool have a lot of multinuclear cells, less in luciferase and Atufect
cells. 100820: 10.30am: Perform caspase 3/7 glo assay.</description>
 </item>

ERROR:

java.lang.ArrayIndexOutOfBoundsException: 100
       at
com.sun.org.apache.xerces.internal.impl.XMLEntityScanner.scanLiteral(XMLEntityScanner.java:1135)
       at
com.sun.org.apache.xerces.internal.impl.XMLScanner.scanAttributeValue(XMLScanner.java:974)
       at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.scanAttribute(XMLNSDocumentScannerImpl.java:460)
       at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.scanStartElement(XMLNSDocumentScannerImpl.java:277)
       at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2747)
       at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:648)
       at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:140)
       at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:510)
       at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:807)
       at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:737)
       at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:107)
       at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1205)
       at
org.carrot2.util.xsltfilter.XSLTFilterServletResponse.processWithXslt(XSLTFilterServletResponse.java:400)
       at
org.carrot2.util.xsltfilter.XSLTFilterServletResponse.finishResponse(XSLTFilterServletResponse.java:294)
       at org.carrot2.util.xsltfilter.XSLTFilter.doFilter(XSLTFilter.java:145)
       at
org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
       at
com.planetj.servlet.filter.compression.CompressingFilter.doFilter(CompressingFilter.java:270)
       at
org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
       at
org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:474)
       at
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:119)
       at
org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:517)
       at
org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
       at
org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:934)
       at
org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:404)
       at
org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:184)
       at
org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:869)
       at
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:117)
       at
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
       at org.eclipse.jetty.server.Server.handle(Server.java:346)
       at
org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:581)
       at
org.eclipse.jetty.server.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:1040)
       at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:592)
       at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:214)
       at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:411)
       at
org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:526)
       at
org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:41)
       at
org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:528)
       at java.lang.Thread.run(Thread.java:619)

Thanks for looking, any help would be great.

Cheers,
James


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WhatsUp Gold - Download Free Network Management Software
The most intuitive, comprehensive, and cost-effective network
management toolset available today.  Delivers lowest initial
acquisition cost and overall TCO of any competing solution.
http://p.sf.net/sfu/whatsupgold-sd
_______________________________________________
Carrot2-developers mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/carrot2-developers